Journals
1. D. Gençağa; Şengül Ayan, S.; Farnoudkia, H.; Okuyucu, S. Statistical Approaches for the Analysis of Dependency Among Neurons Under Noise. Entropy 2020, 22, 387. https://doi.org/10.3390/e22040387
2. D. Gençağa; Ayan, S.Ş. Effects of Neuronal Noise on Neural Communication. Proceedings 2019, 33, 2. https://doi.org/10.3390/proceedings2019033002
3. D. Gencaga, K. H. Knuth, W. B. Rossow, "A recipe for the estimation of information flow in a dynamical system", Entropy, 2015, 17(1), 438-470; doi:10.3390/e17010438
4. D. Gencaga, E. E. Kuruoglu, A. Ertuzun, “Modeling non-Gaussian time-varying vector autoregressive processes by particle filtering”, Multidimensional Systems and Signal Processing, Vol. 21, Number 1, pp. 73-85, March 2010.
5. D. Gencaga, E. E. Kuruoglu, A. Ertuzun and S. Yildirim, “Estimation of Time Varying Autoregressive Symmetric Alpha Stable Processes using Gibbs Sampling”, Signal Processing, Vol. 88, Issue 10, pp. 2564-2572, October 2008.
6. D. Gencaga, A. Ertuzun, E.E. Kuruoglu, “Modeling of non-stationary autoregressive alpha-stable processes by particle filters”, Digital Signal Processing, Vol. 18, Issue 3, pp. 465-478, May 2008.
International conference proceedings
1. Rita Singh, Bhiksha Raj, Deniz Gencaga, “Formant Manipulations in Voice Disguise by Mimicry,” Proceedings of the 4th International Workshop on Biometrics and Forensics, Cyprus, 2016. (Best paper award)
2. Rita Singh, Joseph Keshet, Deniz Gencaga, Bhiksha Raj, ”The relationship of voice onset time and voice offset time to physical age,” Proc. of the 41st Int. Conference on Acoustics, Speech and Signal Processing, (ICASSP 2016), 2016.
3. R. Singh, B. Raj, and D. Gencaga, “Forensic anthropometry from voice: an articulatory-phonetic approach,” in Biometrics & Forensics & Deidentification and Privacy Protection, MIPRO2016. Croatia, 2016.
5. D. Gencaga, N. K. Malakar, D. J. Lary, "Survey on the Estimation of Mutual Information Methods as a Measure of Dependency versus Correlation Analysis," Proc. of the 33rd Int. Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering, AIP Conference Proceedings, 2013.
6. N. K. Malakar, D. Gencaga, and D. J. Lary, “Towards Identification of Relevant Variables in the Aerosol Optical Depth Bias between MODIS and AERONET observations,” Proc. of the 32nd Int. Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering, AIP Conference Proceedings, 2012.
7. N. K. Malakar, D. J. Lary, A. Moore, D. Gencaga, B. Roscoe, A. Albayrak, M. Petrenko, and J. Wei, “Estimation and Bias Correction of Aerosol Abundance using Data-driven Machine Learning and Remote Sensing,” Proc. of the NASA Conference on Intelligent Data Understanding (CIDU), National Center for Atmospheric Research (NCAR), Boulder, Colorado, October 24 - 26, 2012.
8. D. Gencaga, K. H. Knuth, W. B. Rossow, “Comparison of Information-Theoretic methods to estimate the information flow in a dynamical system,” New York Workshop on Computer, Earth, and Space Sciences, NASA Goddard Institute for Space Studies, Feb. 24-25, 2011, New York, NY, USA.
9. D. Gencaga, D. F. Carbon, K. H. Knuth, “Characterization of Interstellar Organic Molecules,” Proceedings of the 28th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering, AIP Conference Proceedings, Volume 1073, pp. 286-293 (2008).
10. K. H. Knuth, D. Gencaga, W. B. Rossow, “Information-Theoretic Methods for Identifying Relationships among Climate Variables”, NASA Earth-Sun Systems Technology Conference (ESTC 2008), Adelphi MD, June 2008. (https://esto.nasa.gov/2012test/conferences/estc2008/)
11. D. Gencaga, E.E. Kuruoglu and A. Ertuzun, “SAR Image Enhancement using Particle Filters”, Proc. of the ESA-EUSC 2005: Image Information Mining – Theory and Application to Earth Observation, 5–7 October 2005, Frascati, Italy (ESA WPP-257, November 2005), ISSN No: 1022-6656, Compiled by: H. Lacoste & L. Ouwehand, European Space Agency, The Netherlands.
12. D. Gencaga and A. Ertuzun, “On The Performance Comparison of Gradient Type Joint-Process Estimators in Adaptive Signal Processing”, 13th European Signal Processing Conference (EUSIPCO 2005), September 2005.
13. D. Gencaga, E.E. Kuruoglu and A. Ertuzun, “Estimation of Time-Varying Autoregressive Symmetric Alpha Stable Processes by Particle Filters”, 13th European Signal Processing Conference (EUSIPCO 2005), Sept. 2005.
14. D. Gencaga, E.E. Kuruoglu and A. Ertuzun, “Bayesian Separation of Non-Stationary Mixtures of Dependent Gaussian Sources”, 25th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering, AIP Conference Proceedings, Volume 803, pp. 257-265 (2005).
Turkish conference proceedings
1. D. Gencaga, E.E. Kuruoglu and A. Ertuzun, “Time-varying autoregressive parameter estimation of Cauchy processes by particle filters”, 13. Sinyal Isleme ve Uygulamalari Konferansi (SIU 2005) May 2005. (IEEE Best student paper award)
2. D. Gencaga and A. Ertuzun, “Cevrimici Bagimsiz Bilesen Ayristirilmasi”, 11. Sinyal Isleme ve Uygulamalari Konferansi Istanbul, Turkey, June 2003.
3. D. Gencaga, L. M. Arslan and A. Ertuzun, “Konusma Isaretleri icin Gercek Zamanli Bir Formant Frekans Kestiricisi”, 10. Sinyal Isleme ve Uygulamalari Konferansi, Pamukkale, Denizli, Turkey, June 2002.
4. D. Gencaga and A. Ertuzun, “Sistem Belirlenmesi icin Merdiven Tipi Uyarlanir Suzgec Yapisi”, 10. Sinyal Isleme ve Uygulamalari Konferansi 2002.
5. D. Gencaga and A. Ertuzun, “Akustik Yanki Giderimi icin Merdiven Tipi Uyarlanir Suzgec Yapisi”, 10. Sinyal Isleme ve Uygulamalari Konferansi, Pamukkale, Denizli, Turkey, June 2002.
Other publications
1. D. Gencaga, M. K. Tse, W. B. Rossow, K. Knuth, “Estimating Entropies and Mutual Information with Error Bars”, 9th World Conference of the Int. Soc. for Bayesian Analysis (ISBA 2008), Australia, 2008.
2. D. Gencaga, E. E. Kuruoglu, A. Ertuzun, “Estimation of Time-Varying Autoregressive Symmetric Alpha Stable Processes by Particle Filters”, Technical Report, 2006-TR-04, ISTI-CNR, 2006.
Patents
US PATENT #10377677, ALCOA USA Corp., “Fertilizer compositions and methods of making and using the same,” M. L. Weaver, K. A. Crum, J. Nichols, D. F. Iwig, S. C. Orkis, G. E. Carkin, D. Gencaga, S. P. Sunday, I. R. Harrison, J. R. Smith, S. L. Parks, M. Gershenzon, 13.08.2019.
US PATENT #9630886, ALCOA USA Corp., “Fertilizer compositions and methods of making and using the same,” M. L. Weaver, K. A. Crum, J. Nichols, D. F. Iwig, S. C. Orkis, G. E. Carkin, D. Gencaga, S. P. Sunday, I. R. Harrison, J. R. Smith, S. L. Parks, M. Gershenzon, 25.04.2017.
US PATENT #9527779, ALCOA USA Corp., “Fertilizer compositions and methods of making and using the same,” M. L. Weaver, K. A. Crum, J. Nichols, D. F. Iwig, S. C. Orkis, G. E. Carkin, D. Gencaga, S. P. Sunday, I. R. Harrison, J. R. Smith, S. L. Parks, M. Gershenzon, 27.12.2016.